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2004 Original Research Papers Chen
J, He X, Li L. Identifying the Patterns of Hematopoietic Stem Cells Gene
Expressions Using Clustering Methods. Journal of Data Science. 2004;2:297-309. Coffman JA, Dickey-Sims C, Haug JS, McCarthy JJ, Robertson AJ. Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene. BMC Biol. 2004;2:6. Abstract Coffman
JA, McCarthy J, Dickey-Sims C, Robertson A. Oral-aboral axis specification in
the sea urchin embryo. II. Mitochondrial distribution and redox state
contribute to establishing polarity in strongylocentrotus purpuratus. Dev
Biol. 2004;273:160-171. Abstract Dubrulle
J, Pourquie O. fgf8 mRNA decay establishes a gradient that couples axial
elongation to patterning in the vertebrate embryo. Nature. 2004;427:419-422.
Abstract Galletta
BJ, Chakravarti M, Banerjee R, Abmayr SM. SNS: adhesive properties,
localization requirements and ectodomain dependence in S2 cells and embryonic
myoblasts. Mech Dev. 2004;121:1455-1468. Abstract Gensheimer M, Mushegian A. Chalcone isomerase family and fold: no longer unique to plants. Protein Sci. 2004;13:540-544. Abstract Gerber M, Eissenberg JC, Kong S, Tenney K, Conaway JW, Conaway RC, Shilatifard A. In vivo requirement of the RNA polymerase II elongation factor elongin A for proper gene expression and development. Mol Cell Biol. 2004;24:9911-9919. Abstract
Glazko GV, Mushegian AR. Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns. Genome Biol. 2004;5:R32. Abstract Glynn EF, Megee PC, Yu HG, Mistrot C, Unal E, Koshland DE, DeRisi JL, Gerton JL. Genome-Wide Mapping of the Cohesin Complex in the Yeast Saccharomyces cerevisiae. PLoS Biol. 2004;2:E259. Abstract He XC, Zhang J, Tong WG, Tawfik O, Ross J, Scoville DH, Tian Q, Zeng X, He X, Wiedemann LM, Mishina Y, Li L. BMP signaling inhibits intestinal stem cell self-renewal through suppression of Wnt-beta-catenin signaling. Nat Genet. 2004;36:1117-1121. Abstract, The comments regarding this paper News and Views. Kawase E, Wong MD, Ding BC, Xie T. Gbb/Bmp signaling is essential for maintaining germline stem cells and for repressing bam transcription in the Drosophila testis. Development. 2004;131:1365-1375. Abstract Kulesa
PM. Developmental imaging: Insights into the avian embryo. Birth Defects Res
Part C Embryo Today. 2004;72:260-266. Abstract Kusch T, Florens L, Macdonald WH, Swanson SK, Glaser RL, Yates Iii JR, Abmayr SM, Washburn MP, Workman JL. Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions. Science. 2004;306:2084-2087. Abstract Kusumi K, Mimoto MS, Covello KL, Beddington RS, Krumlauf R, Dunwoodie SL. Dll3 pudgy mutation differentially disrupts dynamic expression of somite genes. Genesis. 2004;39:115-121. Abstract Laurencon A, Orme CM, Peters HK, Boulton CL, Vladar EK, Langley SA, Bakis EP, Harris DT, Harris NJ, Wayson SM, Hawley RS, Burtis KC. A large-scale screen for mutagen-sensitive Loci in Drosophila. Genetics. 2004;167:217-231. Abstract Lee KK, Prochasson P, Florens L, Swanson SK, Washburn MP, Workman JL. Proteomic analysis of chromatin-modifying complexes in Saccharomyces cerevisiae identifies novel subunits. Biochem Soc Trans. 2004;32:899-903. Abstract Liu J, Mushegian A. Displacements of Prohead Protease Genes in the Late Operons of Double-Stranded-DNA Bacteriophages. J Bacteriol. 2004;186:4369-4375. Abstract Lo AC, Fung MK, Au CL, Chan TS, Sauer B, Chung SS, Chung SK. Transgenic mice over-expressing endothelin-1 in testis transactivated by a Cre/loxP system showed decreased testicular capillary blood flow. Transgenic Res. 2004;13:119-134. Abstract McDermott J, Zhao Y, Sauer B. A simple polymerase chain reaction screen for homologous targeting in embryonic stem cells. Anal Biochem. 2004;332:401-403. Abstract Melko
OM, Mushegian AR. Distribution of words with a predefined range of mismatches
to a DNA probe in bacterial genomes. Bioinformatics. 2004;20:67-74. Abstract Mercurio S, Latinkic B, Itasaki N, Krumlauf R, Smith JC. Connective-tissue growth factor modulates WNT signalling and interacts with the WNT receptor complex. Development. 2004;131:2137-2147. Abstract Petyuk
V, McDermott J, Cook M, Sauer B. Functional mapping of Cre recombinase by
pentapeptide insertional mutagenesis. J Biol Chem. 2004;279:37040-37048.
Abstract Powles N, Marshall H, Economou A, Chiang C, Murakami A, Dickson C, Krumlauf R, Maconochie M. Regulatory analysis of the mouse Fgf3 gene: control of embryonic expression patterns and dependence upon sonic hedgehog (Shh) signalling. Dev Dyn. 2004;230:44-56. Abstract Robert
F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, Rolfe A, Workman JL, Gifford
DK, Young RA. Global Position and Recruitment of HATs and HDACs in the Yeast
Genome. Mol Cell. 2004;16:199-209. Abstract Robertson AJ, Howard JT, Dominski Z, Schnackenberg BJ, Sumerel JL, McCarthy JJ, Coffman JA, Marzluff WF. The sea urchin stem-loop-binding protein: a maternally expressed protein that probably functions in expression of multiple classes of histone mRNA. Nucleic Acids Res. 2004;32:811-818. Abstract Sato
S, Tomomori-Sato C, Parmely TJ, Florens L, Zybailov B, Swanson SK, Banks CA,
Jin J, Cai Y, Washburn MP, Conaway JW, Conaway RC. A set of consensus Mammalian
mediator subunits identified by multidimensional protein identification
technology. Mol Cell. 2004;14:685-691. Abstract Sauer
B, McDermott J. DNA recombination with a heterospecific Cre homolog identified
from comparison of the pac-c1 regions of P1-related phages. Nucleic Acids
Res. 2004;32:6086-6095. Abstract Song X, Wong MD, Kawase E, Xi R, Ding BC, McCarthy JJ, Xie T. Bmp signals from niche cells directly repress transcription of a differentiation-promoting gene, bag of marbles, in germline stem cells in the Drosophila ovary. Development. 2004;131:1353-1364. Abstract Teddy JM, Kulesa PM. In vivo evidence for short- and long-range cell communication in cranial neural crest cells. Development. 2004;131:6141-6151. Abstract Tian Q, Feetham MC, Tao WA, He XC, Li L, Aebersold R, Hood
L. Proteomic analysis identifies that 14-3-3{zeta} interacts with
{beta}-catenin and facilitates its activation by Akt. Proc Natl Acad Sci U S
A. 2004. Abstract Weber SA, Gerton JL, Polancic JE, DeRisi JL, Koshland D, Megee PC. The Kinetochore Is an Enhancer of Pericentric Cohesin Binding. PLoS Biol; 2004;2:E260. Abstract. Wiederkehr C, Basavaraj R, Sarrauste de Menthiere C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, Dumitrescu T, Fellous M, Goldman A, Grootegoed JA, Hawley R, Ishii R, Jegou B, Kaufman RJ, Klein F, Lamb N, Maro B, Nasmyth K, Nicolas A, Orr-Weaver T, Philippsen P, Pineau C, Rabitsch KP, Reinke V, Roest H, Saunders W, Schroder M, Schedl T, Siep M, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Esposito RE, Primig M. GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Res. 2004;32 Database issue:D560-567. Abstract Yan
Q, Kamura T, Cai Y, Jin J, Ivan M, Mushegian A, Conaway RC, Conaway JW.
Identification of elongin C and Skp1 sequences that determine cullin selection.
J Biol Chem. 2004. Abstract Yang QH, Du C. Smac/DIABLO selectively reduces the levels of
c-IAP1 and c-IAP2 but not that of XIAP and livin in HeLa cells. J Biol Chem.
2004;279:16963-16970. Abstract Reviews, Commentaries
and Chapters Abmayr
SM, Kocherlakota K. Muscle morphogenesis: the process of embryonic myoblast
fusion. In: H Sink, ed. Drosophila Muscle Development: Eurekah.com;
2004. Coffman
JA. Cell cycle development. Dev Cell. 2004;6:321-327.
Abstract Coffman
JA, Yuh CH. Identification of sequence-specific DNA binding proteins. Methods
Cell Biol. 2004;74:653-675. Abstract Conaway
JW, Conaway RC. RNA Polymerase II and Basal Transcription Factors in
Eukaryotes. Encyclopedia of biological chemistry. 1st ed. Amsterdam ;
Boston: Elsevier; 2004;3:763-765. Abstract Conaway
JW, Conaway RC. Von Hippel-Lindau (VHL) Protein. Encyclopedia of biological
chemistry. 1st ed. Amsterdam ; Boston: Elsevier; 2004;4:416-418. Abstract Dubrulle
J, Pourquie O. Coupling segmentation to axis formation. Development. 2004;131:5783-5793.
Abstract Ercan
S, Carrozza MJ, Workman JL. Global nucleosome distribution and the regulation
of transcription in yeast. Genome Biol. 2004;5:243. Abstract Jones NC, Trainor P. The therapeutic potential of stem cells in the treatment of craniofacial abnormalities. Expert Opin Biol Ther. 2004;4:645-657. Abstract Kasemeier J, Lefcort F, Fraser SE, Kulesa P. A novel sagittal slice explant technique for time-lapse imaging of the formation of the chick periperal nervous system. In: R Yuste, and A Konnerth, eds. Imaging in neuroscience and development : a laboratory manual. New York: Oxford: Cold Spring Harbor Laboratory Press; Lavis Marketing; 2004:700 p. Kulesa
P, Ellies DL, Trainor PA. Comparative analysis of neural crest cell death,
migration, and function during vertebrate embryogenesis. Dev Dyn. 2004;229:14-29. Abstract Kulesa P, Fraser SE. In Ovo Imaging of Avian Embryogenesis. In: R Yuste, and A Konnerth, eds. Imaging in neuroscience and development : a laboratory manual. New York: Oxford: Cold Spring Harbor Laboratory Press; Lavis Marketing; 2004:700 p. Melton
KR, Iulianella A, Trainor PA. Gene expression and regulation of hindbrain and
spinal cord development. Front Biosci. 2004;9:117-138. Abstract Mushegian A. Evolution and function of processosome, the complex that assembles ribosomes in eukaryotes: clues from comparative sequence analysis. Practical bioinformatics. Berlin ; New York: Springer; 2004;15:xvii, 265 p. Page
SL, Hawley RS. The genetics and molecular biology of the synaptonemal complex. Annu
Rev Cell Dev Biol. 2004;20:525-558. Abstract Pourquie
O. The chick embryo: a leading model in somitogenesis studies. Mech Dev.
2004;121:1069-1079. Abstract Trainor
PA. Developmental biology is "cruzing". Dev Cell. 2004;7:481-486. Abstract Trainor
PA, Bronner-Fraser M, Krumlauf R. Neural Crest Cells. In: RP Lanza, ed. Book
Chapter for 2 vol. work, The Handbook of Stem Cells. Boston, MA: Elsevier
Academic; 2004:2 v. Washburn
MP. Utilisation of proteomics datasets generated via multidimensional protein
identification technology (MudPIT). Brief Funct Genomic Proteomic. 2004;3:280-286. Abstract Workman
JL, Abmayr SM. Histone H3 variants and modifications on transcribed genes. Proc
Natl Acad Sci U S A. 2004;101:1429-1430. Abstract Books Ashburner
M, Hawley RS, Golic KG. Drosophila : A Laboratory Handbook, 2nd Edition:
Cold Springs Harbor Press; 2004. |
